Interactive Visualization of Major Pollutant Levels in the United States2 years ago
Installation | Pollutant data | Shiny application
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Introduction to snpsettest3 years ago
GWAS summary statistics | Reference data | Harmonize GWAS summary to the reference data | Map SNPs to genes | Perform gene-based association tests
A set-based association test in snpsettest3 years ago
Introduction to LCMSQA3 years ago
Installation | Parallel Processing | Shiny App | Example Data | File Input | Tuning Parameters | 1. Set m/z and retention time of interest | 2. Peak picking using the centWave method | 3. Peak grouping using the peak density method | Tabs | 1. TIC | 2. Mass Spectrum | 3. XIC | 4. Feature Detection | References
Processing quantitative metabolomics data with the qmtools package3 years ago
Introduction | Installation | Data preparation | Feature filtering | Imputation | Normalization | Dimension-reduction | Feature clustering | Sample comparison | References | Session info
Processing 1000 Genomes data for set-based association tests5 years ago
Overview | Prerequisites | Choose an appropriate population | Convert the 1000 Genomes data to PLINK 1 binary format | Read PLINK 1 binary fileset to R session
