{
  "_id": "6a49e46fb9e0f8b4cfe33fb1",
  "Package": "LCMSQA",
  "Title": "Liquid Chromatography/Mass Spectrometry (LC/MS) Quality\nAssessment",
  "Version": "1.0.2",
  "Authors@R": "c(\nperson(given = \"Jaehyun\",\nfamily = \"Joo\",\nrole = c(\"aut\", \"cre\"),\nemail = \"jaehyunjoo@outlook.com\"),\nperson(given = \"Blanca\",\nfamily = \"Himes\",\nrole = c(\"aut\"))\n)",
  "Description": "The goal of 'LCMSQA' is to make it easy to check the\nquality of liquid chromatograph/mass spectrometry (LC/MS)\nexperiments using a 'shiny' application. This package provides\ninteractive data visualizations for quality control (QC)\nsamples, including total ion current chromatogram (TIC), base\npeak chromatogram (BPC), mass spectrum, extracted ion\nchromatogram (XIC), and feature detection results from internal\nstandards or known metabolites.",
  "License": "GPL (>= 3)",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.2.3",
  "biocViews": "",
  "VignetteBuilder": "knitr",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-14 07:58:35 UTC",
    "User": "root"
  },
  "Author": "Jaehyun Joo [aut, cre], Blanca Himes [aut]",
  "Maintainer": "Jaehyun Joo <jaehyunjoo@outlook.com>",
  "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev libssl-dev\nzlib1g-dev",
  "Repository": "https://jaehyunjoo.r-universe.dev",
  "Date/Publication": "2024-01-13 02:37:49 UTC",
  "RemoteUrl": "https://github.com/cran/LCMSQA",
  "RemoteRef": "HEAD",
  "RemoteSha": "70085723c9ac819b2ab373c2fed4b294e5a1eae9",
  "_user": "jaehyunjoo",
  "_type": "src",
  "_file": "LCMSQA_1.0.2.tar.gz",
  "_fileid": "https://r2.ropensci.org/2829037d87d6be0fe39317445ffa9940d68b7e53fb784c48437311517bc63fc1",
  "_filesize": 1058239,
  "_sha256": "2829037d87d6be0fe39317445ffa9940d68b7e53fb784c48437311517bc63fc1",
  "_expires": "2026-10-13T04:58:21.000Z",
  "_created": "2026-06-14T07:58:35.000Z",
  "_published": "2026-07-05T04:58:23.323Z",
  "_jobs": [
    {
      "job": 85194106594,
      "time": 338,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7618958474"
    },
    {
      "job": 85194106659,
      "time": 326,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7618956784"
    },
    {
      "job": 85194106754,
      "time": 220,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7618939426"
    },
    {
      "job": 85194106631,
      "time": 287,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7618947142"
    },
    {
      "job": 85194106598,
      "time": 513,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7618911935"
    },
    {
      "job": 85194106747,
      "time": 179,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7618936924"
    },
    {
      "job": 85194106683,
      "time": 279,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7618951028"
    },
    {
      "job": 85194106743,
      "time": 222,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7618942811"
    },
    {
      "job": 85194106617,
      "time": 274,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7618949550"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/jaehyunjoo/actions/runs/27492418679",
  "_status": "success",
  "_upstream": "https://github.com/cran/LCMSQA",
  "_commit": {
    "id": "70085723c9ac819b2ab373c2fed4b294e5a1eae9",
    "author": "Jaehyun Joo <jaehyunjoo@outlook.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.0.2\n",
    "time": 1705113469
  },
  "_maintainer": {
    "name": "Jaehyun Joo",
    "email": "jaehyunjoo@outlook.com",
    "login": "jaehyunjoo",
    "description": "Informatics",
    "uuid": 10162429
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.0.0",
      "role": "Depends"
    },
    {
      "package": "bsplus",
      "role": "Imports"
    },
    {
      "package": "data.table",
      "role": "Imports"
    },
    {
      "package": "DT",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "plotly",
      "role": "Imports"
    },
    {
      "package": "shiny",
      "role": "Imports"
    },
    {
      "package": "shinycssloaders",
      "role": "Imports"
    },
    {
      "package": "shinyjs",
      "role": "Imports"
    },
    {
      "package": "shinyWidgets",
      "role": "Imports"
    },
    {
      "package": "BiocManager",
      "role": "Suggests"
    },
    {
      "package": "xcms",
      "role": "Suggests"
    },
    {
      "package": "MSnbase",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "jaehyunjoo",
      "count": 3,
      "uuid": 10162429
    }
  ],
  "_userbio": {
    "uuid": 10162429,
    "type": "user",
    "name": "Jaehyun Joo",
    "followers": 6,
    "description": "Informatics"
  },
  "_downloads": {
    "count": 192,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/LCMSQA"
  },
  "_searchresults": 3,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/LCMSQA.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_realowner": "jaehyunjoo",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2023-03-16"
    },
    {
      "version": "1.0.1",
      "date": "2023-08-09"
    },
    {
      "version": "1.0.2",
      "date": "2024-01-12"
    }
  ],
  "_exports": [
    "runQA"
  ],
  "_help": [
    {
      "page": "LCMSQA-package",
      "title": "LC/MS Quality Assessment",
      "topics": [
        "LCMSQA-package",
        "LCMSQA"
      ]
    },
    {
      "page": "runQA",
      "title": "Start LC/MS QA application",
      "topics": [
        "runQA"
      ]
    }
  ],
  "_readme": "https://github.com/cran/LCMSQA/raw/HEAD/README.md",
  "_rundeps": [
    "askpass",
    "base64enc",
    "bslib",
    "bsplus",
    "cachem",
    "cli",
    "commonmark",
    "cpp11",
    "crosstalk",
    "curl",
    "data.table",
    "digest",
    "dplyr",
    "DT",
    "evaluate",
    "farver",
    "fastmap",
    "fontawesome",
    "fs",
    "generics",
    "ggplot2",
    "glue",
    "gtable",
    "highr",
    "htmltools",
    "htmlwidgets",
    "httpuv",
    "httr",
    "isoband",
    "jquerylib",
    "jsonlite",
    "knitr",
    "labeling",
    "later",
    "lazyeval",
    "lifecycle",
    "lubridate",
    "magrittr",
    "memoise",
    "mime",
    "openssl",
    "otel",
    "pillar",
    "pkgconfig",
    "plotly",
    "promises",
    "purrr",
    "R6",
    "rappdirs",
    "RColorBrewer",
    "Rcpp",
    "rlang",
    "rmarkdown",
    "S7",
    "sass",
    "scales",
    "shiny",
    "shinycssloaders",
    "shinyjs",
    "shinyWidgets",
    "sourcetools",
    "stringi",
    "stringr",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "timechange",
    "tinytex",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr",
    "xfun",
    "xtable",
    "yaml"
  ],
  "_vignettes": [
    {
      "source": "LCMSQA.Rmd",
      "filename": "LCMSQA.html",
      "title": "Introduction to LCMSQA",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Installation",
        "Parallel Processing",
        "Shiny App",
        "Example Data",
        "File Input",
        "Tuning Parameters",
        "1. Set m/z and retention time of interest",
        "2. Peak picking using the centWave method",
        "3. Peak grouping using the peak density method",
        "Tabs",
        "1. TIC",
        "2. Mass Spectrum",
        "3. XIC",
        "4. Feature Detection",
        "References"
      ],
      "created": "2023-03-16 18:10:02",
      "modified": "2023-08-09 01:42:22",
      "commits": 2
    }
  ],
  "_score": 2.6989700043360187,
  "_indexed": true,
  "_nocasepkg": "lcmsqa",
  "_universes": [
    "jaehyunjoo"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.2",
      "date": "2026-06-14T08:02:55.000Z",
      "distro": "noble",
      "commit": "70085723c9ac819b2ab373c2fed4b294e5a1eae9",
      "fileid": "https://r2.ropensci.org/7cc6c5f4c54627590b430ca2a08ef268c21c216143823a6029e19461bccaab3c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jaehyunjoo/actions/runs/27492418679"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.2",
      "date": "2026-06-14T08:02:57.000Z",
      "distro": "noble",
      "commit": "70085723c9ac819b2ab373c2fed4b294e5a1eae9",
      "fileid": "https://r2.ropensci.org/6901f42008f94bc1ce7c798151cfd242bf09e0ff8af54d4f6c13ea6b117b96eb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jaehyunjoo/actions/runs/27492418679"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.2",
      "date": "2026-06-14T08:01:43.000Z",
      "commit": "70085723c9ac819b2ab373c2fed4b294e5a1eae9",
      "fileid": "https://r2.ropensci.org/7c32c3497f678351d9c8b2fd08b8f1733e4770a958dfd189959c8662a5993921",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jaehyunjoo/actions/runs/27492418679"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.2",
      "date": "2026-06-14T08:02:09.000Z",
      "commit": "70085723c9ac819b2ab373c2fed4b294e5a1eae9",
      "fileid": "https://r2.ropensci.org/9f1fcd40b8b5b6571c1e3d534a013f89139a6893c3d9feb0f01e501dd60ee81a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jaehyunjoo/actions/runs/27492418679"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.2",
      "date": "2026-06-14T08:02:53.000Z",
      "commit": "70085723c9ac819b2ab373c2fed4b294e5a1eae9",
      "fileid": "https://r2.ropensci.org/a542889e674d09766645b9acef979716eeeed238a3d62545bce87ba79039d487",
      "status": "success",
      "buildurl": "https://github.com/r-universe/jaehyunjoo/actions/runs/27492418679"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.2",
      "date": "2026-06-14T08:01:38.000Z",
      "commit": "70085723c9ac819b2ab373c2fed4b294e5a1eae9",
      "fileid": "https://r2.ropensci.org/fe26014a081bc19f658196bb62644275459a138891b14dd05b6ec47fcdf21b25",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jaehyunjoo/actions/runs/27492418679"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.2",
      "date": "2026-06-14T08:01:05.000Z",
      "commit": "70085723c9ac819b2ab373c2fed4b294e5a1eae9",
      "fileid": "https://r2.ropensci.org/b53231a6ec57863a83321b51a626c17042b09ce5eb04cb3ff7a319cdd96a525b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jaehyunjoo/actions/runs/27492418679"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.0.2",
      "date": "2026-06-14T08:02:11.000Z",
      "commit": "70085723c9ac819b2ab373c2fed4b294e5a1eae9",
      "fileid": "https://r2.ropensci.org/6f95448927e2e9105855e1fc2ed7e7592cf4ef43d41fec2ab8eabf632eb288a5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jaehyunjoo/actions/runs/27492418679"
    }
  ]
}